* using log directory 'd:/RCompile/CRANincoming/R-devel/ALLSPICER.Rcheck'
* using R Under development (unstable) (2024-10-11 r87227 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ALLSPICER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ALLSPICER' version '0.1.9'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Wenhan Lu <wlu@broadinstitute.org>'

New submission

Possibly misspelled words in DESCRIPTION:
  ALLelic (3:8)
  Pleiotropy (3:28)
  al (10:406)
  allelic (10:227)
  et (10:403)
  pleiotropic (10:191)

Found the following (possibly) invalid DOIs:
  DOI: https://doi.org/10.1101/2024.10.01.614806
    From: DESCRIPTION
    Status: 404
    Message: Not Found

The Description field contains
  https://doi.org/10.1101/2024.10.01.614806>.
Please enclose URLs in angle brackets (<...>).
The Description field contains
  https://doi.org/10.1101/2024.10.01.614806>.
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'ALLSPICER' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [15s] OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 NOTE