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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(AFTMicroMed) > > test_check("AFTMicroMed") starting worker pid=275836 on localhost:11974 at 04:36:53.854 starting worker pid=111904 on localhost:11974 at 04:36:53.854 Parallel backend: 2 workers started. Loading required package: AFTMicroMed loaded AFTMicroMed and set parent environment Loading required package: AFTMicroMed loaded AFTMicroMed and set parent environment GAMLSS-RS iteration 1: Global Deviance = 190.8617 GAMLSS-RS iteration 2: Global Deviance = 187.2126 GAMLSS-RS iteration 1: Global Deviance = 166.0701 GAMLSS-RS iteration 3: Global Deviance = 187.2124 GAMLSS-RS iteration 2: Global Deviance = 156.6726 GAMLSS-RS iteration 3: Global Deviance = 156.6704 GAMLSS-RS iteration 4: Global Deviance = 156.6703 LogLik after Block 1: -386.479003 LogLik after Block 1: -369.699726 LogLik after Block 2: -386.479003 LogLik after Block 2: -369.699726 LogLik after Block 3: -374.999149 LogLik after Block 1: -374.999149 LogLik after Block 2: -374.999149 LogLik after Block 3: -359.137866 LogLik after Block 1: -359.137866 LogLik after Block 2: -359.137866 LogLik after Block 3: -373.552201 Iter 2: LogL=-373.552201 abs_diff=1.446949 rel_diff=0.003859 param_diff=0.253426 LogLik after Block 1: -373.552201 LogLik after Block 2: -373.552201 LogLik after Block 3: -357.485619 Iter 2: LogL=-357.485619 abs_diff=1.652247 rel_diff=0.004601 param_diff=0.232549 LogLik after Block 1: -357.485619 LogLik after Block 2: -357.485619 LogLik after Block 3: -373.500026 Iter 3: LogL=-373.500026 abs_diff=0.052175 rel_diff=0.000140 param_diff=0.054832 Converged at iteration 3 Louis info: i = 50 LogLik after Block 3: -357.405644 Iter 3: LogL=-357.405644 abs_diff=0.079974 rel_diff=0.000224 param_diff=0.059497 Converged at iteration 3 Louis info: i = 100 Louis info: i = 50 Louis info: i = 150 Louis info: i = 100 Louis info: i = 200 Louis info: i = 150 Louis info: i = 250 Louis info: i = 200 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 187.4843 GAMLSS-RS iteration 2: Global Deviance = 176.2097 GAMLSS-RS iteration 3: Global Deviance = 176.1782 GAMLSS-RS iteration 4: Global Deviance = 176.1781 LogLik after Block 1: -370.031778 LogLik after Block 2: -370.031778 LogLik after Block 3: -362.991695 LogLik after Block 1: -362.991695 LogLik after Block 2: -362.991695 Louis info: i = 250 Louis info: i = 300 LogLik after Block 3: -361.315351 Iter 2: LogL=-361.315351 abs_diff=1.676344 rel_diff=0.004618 param_diff=0.202559 LogLik after Block 1: -361.315351 GAMLSS-RS iteration 1: Global Deviance = 163.3319 GAMLSS-RS iteration 2: Global Deviance = 145.8626 GAMLSS-RS iteration 3: Global Deviance = 145.6626 GAMLSS-RS iteration 4: Global Deviance = 145.6623 LogLik after Block 1: -370.769273 LogLik after Block 2: -361.315351 LogLik after Block 2: -370.769273 LogLik after Block 3: -356.698331 LogLik after Block 1: -356.698331 LogLik after Block 2: -356.698331 LogLik after Block 3: -361.215351 Iter 3: LogL=-361.215351 abs_diff=0.100000 rel_diff=0.000277 param_diff=0.049825 Converged at iteration 3 Louis info: i = 50 LogLik after Block 3: -355.098360 Iter 2: LogL=-355.098360 abs_diff=1.599971 rel_diff=0.004486 param_diff=0.306803 LogLik after Block 1: -355.098360 LogLik after Block 2: -355.098360 Louis info: i = 100 LogLik after Block 3: -355.054894 Iter 3: LogL=-355.054894 abs_diff=0.043465 rel_diff=0.000122 param_diff=0.061954 Converged at iteration 3 Louis info: i = 150 Louis info: i = 50 Louis info: i = 200 Louis info: i = 100 Louis info: i = 250 Louis info: i = 150 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 88.51 GAMLSS-RS iteration 2: Global Deviance = 34.2098 GAMLSS-RS iteration 3: Global Deviance = -7.9189 GAMLSS-RS iteration 4: Global Deviance = -25.7408 GAMLSS-RS iteration 5: Global Deviance = -28.1927 GAMLSS-RS iteration 6: Global Deviance = -28.3161 GAMLSS-RS iteration 7: Global Deviance = -28.3201 GAMLSS-RS iteration 8: Global Deviance = -28.3202 LogLik after Block 1: -281.193872 Louis info: i = 200 LogLik after Block 2: -281.193865 Louis info: i = 250 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 141.2584 GAMLSS-RS iteration 2: Global Deviance = 125.9815 GAMLSS-RS iteration 3: Global Deviance = 125.464 GAMLSS-RS iteration 4: Global Deviance = 125.4615 GAMLSS-RS iteration 5: Global Deviance = 125.4615 LogLik after Block 1: -359.581487 LogLik after Block 3: -269.470531 LogLik after Block 2: -359.581487 LogLik after Block 1: -269.470531 LogLik after Block 2: -269.470522 LogLik after Block 3: -345.684520 LogLik after Block 1: -345.684520 LogLik after Block 2: -345.684520 LogLik after Block 3: -344.150164 Iter 2: LogL=-344.150164 abs_diff=1.534356 rel_diff=0.004439 param_diff=0.481865 LogLik after Block 1: -344.150164 LogLik after Block 2: -344.150164 LogLik after Block 3: -266.368878 Iter 2: LogL=-266.368878 abs_diff=3.101653 rel_diff=0.011510 param_diff=0.354184 LogLik after Block 1: -266.368878 LogLik after Block 2: -266.368875 LogLik after Block 3: -344.117385 Iter 3: LogL=-344.117385 abs_diff=0.032779 rel_diff=0.000095 param_diff=0.040648 Converged at iteration 3 Louis info: i = 50 Louis info: i = 100 LogLik after Block 3: -266.060993 Iter 3: LogL=-266.060993 abs_diff=0.307885 rel_diff=0.001156 param_diff=0.209414 LogLik after Block 1: -266.060993 LogLik after Block 2: -266.060991 Louis info: i = 150 Louis info: i = 200 LogLik after Block 3: -266.038484 Iter 4: LogL=-266.038484 abs_diff=0.022509 rel_diff=0.000085 param_diff=0.030013 Converged at iteration 4 Louis info: i = 250 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 161.6005 GAMLSS-RS iteration 2: Global Deviance = 135.6612 GAMLSS-RS iteration 3: Global Deviance = 134.4764 GAMLSS-RS iteration 4: Global Deviance = 134.4705 GAMLSS-RS iteration 5: Global Deviance = 134.4704 LogLik after Block 1: -357.959723 LogLik after Block 2: -357.959723 Louis info: i = 50 LogLik after Block 3: -345.850793 LogLik after Block 1: -345.850793 LogLik after Block 2: -345.850793 LogLik after Block 3: -344.400535 Iter 2: LogL=-344.400535 abs_diff=1.450258 rel_diff=0.004193 param_diff=0.325433 LogLik after Block 1: -344.400535 LogLik after Block 2: -344.400535 Louis info: i = 100 LogLik after Block 3: -344.360667 Iter 3: LogL=-344.360667 abs_diff=0.039868 rel_diff=0.000116 param_diff=0.049688 Converged at iteration 3 Louis info: i = 50 Louis info: i = 100 Louis info: i = 150 Louis info: i = 150 Louis info: i = 200 Louis info: i = 200 Louis info: i = 250 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 167.3538 GAMLSS-RS iteration 2: Global Deviance = 131.4848 GAMLSS-RS iteration 3: Global Deviance = 128.7212 GAMLSS-RS iteration 4: Global Deviance = 128.6998 GAMLSS-RS iteration 5: Global Deviance = 128.6997 LogLik after Block 1: -363.203146 LogLik after Block 2: -363.203146 Louis info: i = 250 LogLik after Block 3: -348.202525 LogLik after Block 1: -348.202525 LogLik after Block 2: -348.202525 LogLik after Block 3: -345.826396 Iter 2: LogL=-345.826396 abs_diff=2.376128 rel_diff=0.006824 param_diff=0.345374 LogLik after Block 1: -345.826396 LogLik after Block 2: -345.826396 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 141.4094 GAMLSS-RS iteration 2: Global Deviance = 109.0672 GAMLSS-RS iteration 3: Global Deviance = 103.6158 GAMLSS-RS iteration 4: Global Deviance = 103.4832 GAMLSS-RS iteration 5: Global Deviance = 103.4823 LogLik after Block 1: -348.417477 LogLik after Block 2: -348.417475 LogLik after Block 3: -345.737913 Iter 3: LogL=-345.737913 abs_diff=0.088484 rel_diff=0.000256 param_diff=0.110502 Converged at iteration 3 Louis info: i = 50 LogLik after Block 3: -335.417739 LogLik after Block 1: -335.417739 LogLik after Block 2: -335.417739 Louis info: i = 100 Louis info: i = 150 LogLik after Block 3: -333.692668 Iter 2: LogL=-333.692668 abs_diff=1.725071 rel_diff=0.005143 param_diff=0.268570 LogLik after Block 1: -333.692668 LogLik after Block 2: -333.692668 Louis info: i = 200 LogLik after Block 3: -333.626120 Iter 3: LogL=-333.626120 abs_diff=0.066548 rel_diff=0.000199 param_diff=0.087351 Converged at iteration 3 Louis info: i = 250 Louis info: i = 300 GAMLSS-RS iteration 1: Global Deviance = 158.8252 GAMLSS-RS iteration 2: Global Deviance = 108.7396 GAMLSS-RS iteration 3: Global Deviance = 99.1647 GAMLSS-RS iteration 4: Global Deviance = 98.9678 GAMLSS-RS iteration 5: Global Deviance = 98.9669 LogLik after Block 1: -344.880347 LogLik after Block 2: -344.880346 Louis info: i = 50 LogLik after Block 3: -333.057460 LogLik after Block 1: -333.057460 LogLik after Block 2: -333.057459 Louis info: i = 100 LogLik after Block 3: -330.950360 Iter 2: LogL=-330.950360 abs_diff=2.107099 rel_diff=0.006327 param_diff=0.417452 LogLik after Block 1: -330.950360 LogLik after Block 2: -330.950360 Louis info: i = 150 LogLik after Block 3: -330.856043 Iter 3: LogL=-330.856043 abs_diff=0.094317 rel_diff=0.000285 param_diff=0.081200 Converged at iteration 3 Louis info: i = 200 Louis info: i = 50 Louis info: i = 100 Louis info: i = 250 Louis info: i = 150 Louis info: i = 300 Louis info: i = 200 Louis info: i = 250 Louis info: i = 300 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] > > proc.time() user system elapsed 33.07 0.60 1255.12