* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ADSIHT.Rcheck’ * using R Under development (unstable) (2024-12-03 r87418) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ADSIHT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ADSIHT’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Yanhang Zhang ’ New submission Possibly misspelled words in DESCRIPTION: algrithm (11:130) dimensinal (11:56) threshlding (11:118) Found the following (possibly) invalid URLs: URL: https://github.com/abess-team/Group-splicing_codes/issues (moved to https://github.com/abess-team/A-Splicing-Approach-to-Best-Subset-of-Groups-Selection/issues) From: README.md Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. The Description field contains details, please see . Please refer to arXiv e-prints via their arXiv DOI . The Date field is over a month old. * checking package namespace information ... NOTE Namespace with empty importFrom: ‘Rcpp’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .github These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. CRAN-pack does not know about .github * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ADSIHT’ can be installed ... [30s/30s] WARNING Found the following significant warnings: Warning: /srv/hornik/tmp/CRAN_pretest/ADSIHT.Rcheck/00_pkg_src/ADSIHT/man/ADSIHT.Rd:32: unknown macro '\leq' See ‘/srv/hornik/tmp/CRAN_pretest/ADSIHT.Rcheck/00install.out’ for details. * used C++ compiler: ‘Debian clang version 19.1.4 (1)’ * checking C++ specification ... NOTE Specified C++11: please drop specification unless essential * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Authors@R field gives no person with maintainer role, valid email address and non-empty name. Author field differs from that derived from Authors@R Author: ‘Yanhang Zhang [aut, cre]’ Authors@R: ‘Yanhang Zhang [aut]’ Maintainer field differs from that derived from Authors@R Maintainer: ‘Yanhang Zhang ’ Authors@R: ‘’ * checking top-level files ... NOTE Non-standard files/directories found at top level: ‘CITATION.md’ ‘CONTRIBUTE.md’ ‘DISCLAIMER’ ‘SUPPORT.md’ ‘_config.yml’ ‘_pkgdown.yml’ ‘paper’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Found the following CITATION file in a non-standard place: CITATION.md Most likely ‘inst/CITATION’ should be used instead. * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘Matrix’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE gen.data: no visible global function definition for ‘rnorm’ gen.data: no visible global function definition for ‘rbinom’ Undefined global functions or variables: rbinom rnorm Consider adding importFrom("stats", "rbinom", "rnorm") to your NAMESPACE file. * checking Rd files ... [0s/0s] WARNING prepare_Rd: ./man/ADSIHT.Rd:32: unknown macro '\leq' prepare_Rd: ADSIHT.Rd:43-45: Dropping empty section \value * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘ADSIHT.ML’ ‘DSIHT_Cpp’ ‘DSIHT_ML_Cpp’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING Functions or methods with usage in Rd file 'example_function_sum.Rd' but not in code: ‘example_function_sum’ Codoc mismatches from Rd file 'ADSIHT.Rd': ADSIHT Code: function(x, y, group, s0, kappa = 0.9, ic.type = c("dsic", "loss"), ic.scale = 3, ic.coef = 3, L = 5, weight = rep(1, nrow(x)), coef1 = 1, coef2 = 1, eta = 0.8, max_iter = 20, method = "ols") Docs: function(x, y, group, s0, kappa = 0.9, ic.type = c("ebic", "sic", "bic", "aic", "loss"), ic.scale = 1, ic.coef = 1, L = 5, weight = rep(1, nrow(x))) Argument names in code not in docs: coef1 coef2 eta max_iter method Mismatches in argument default values: Name: 'ic.type' Code: c("dsic", "loss") Docs: c("ebic", "sic", "bic", "aic", "loss") Name: 'ic.scale' Code: 3 Docs: 1 Name: 'ic.coef' Code: 3 Docs: 1 * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'ADSIHT.Rd' ‘ic.coef’ ‘L’ ‘weight’ Undocumented arguments in Rd file 'gen.data.Rd' ‘cor.type’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [0s/1s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 6 WARNINGs, 8 NOTEs